How far are we from the $1000 genome?:
[Via Genetic Future]
Still quite a way, based on this survey of second-generation sequencing users (subscription only, I think) conducted by the industry publication In Sequence.
Along with a range of other questions, the survey asked users about the cost to generate one billion base pairs (one gigabase, or Gb) on their platform at the end of 2008, which is about as current as we’re likely to get. I’ve estimated below the total cost to sequence a complete* human genome, assuming an overall depth of coverage** of 30x, for the three most widely-used second-generation platforms:

The fine print
Note that the number of respondents is pretty small for each platform, although it’s probably enough to get a fairly good idea of the cost situation at the current time (although I’d appreciate any comments from users out there who think the costs are inflated).
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There will probably always be a tradeoff between real accuracy and cost. One can have a really well characterized sequence, with 30 times coverage of the entire genome and all those repetitive regions done for a lot of money.
Or one can use a faster approach but with increasing chances of errors and unsequenced regions. This could be a real problem is medical decisions are made from data that could have some errors in them, both false positives and false negatives.
People think the DNA sequence is hard data but in one viewpoint, it is still soft with some level of inaccuracies present. How much to pay to reduce the inaccuracies?
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