I want an invitation

robbe by cliff1066
November Symposium:
[Via The Science and Entertainment Exchange]

Sponsored by Ralph J. Cicerone, Patrick Soon-Shiong, and Jerry and Janet Zucker, and hosted by Seth MacFarlane, the symposium will feature more than a dozen prominent scientists who will act as narrators and guides for this groundbreaking event.

Wednesday, November 19, 2008 Registration opens at 12:00pm – Symposium starts at 12:45pm

2000 Avenue of the Stars Los Angeles, CA 90067

The Science & Entertainment Exchange will sponsor an invitation only half-day symposium at the Creative Artists Agency Building in Los Angeles on Wednesday, November 19, 2008. Hosted by Seth MacFarlane, the symposium will not only serve as the platform from which to formally announce The Exchange, it will also be an extraordinary networking and learning opportunity for all attendees. We plan to showcase past examples of successful science and entertainment collaborations while also exploring new themes and messages that could easily translate to entertainment media. By demonstrating the synergy between science that is accurate and entertainment that is engaging, we hope to encourage a dialog that is fruitful and rewarding for everyone.

Check out the planned lineup. A Genomics Salon moderated by Lawrence Kasdan. A panel on Climate and Energy hosted by Valerie Plame Wilson. Lots of really cool scientists. And Seth Macfarlane.

Now if I only knew how to get invited. And get down to LA by tomorrow. Who do I know? Maybe I could stand outside and do my scientist act and someone would believe I’m supposed to be there.

” NO. NO. I must be on the list. I worked with Dr. Venter at TIGR on the multiplex sequncitron attempting to transmogravitate the DNA molecules into a substantially neutral state. I’m on all the papers!”

It could happen!

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A corn controversy

corn by Darwin Bell
Apparent spread of transgenes from GM corn:
[Via Effect Measure]

In 2001 Ignacio Chapela, an ecologist from the University of California, Berkeley, and co-author David Quist published a highly controversial paper in Nature that appeared to show that genetically engineered genes used in genetically modified (GM) corn (maize) was spreading from GM cornfields in Mexico into traditional corn crops. This set off a firestorm where proponents of GM agriculture declared the paper fatally flawed, pointing out some apparent errors. Accusations of agribusiness conflicts of interest were traded with those of political agendas. Nature subsequently published an “editor’s note” stating the journal felt the paper’s data were insufficient to support its conclusions. The journal has been careful to say that the editor’s note was not the same as a retraction, although advocates of GM crops have claimed it was. A subsequent paper in Proceedings of the National Academy of Sciences (PNAS) by Ohio State plant ecologist Allison Snow failed to find transgenes in maize in the same areas sampled by Chapela and Quist, although questions about that paper were raised on the grounds of statistical power. Now the latest chapter, a forthcoming paper in the journal Molecular Ecology by yet another researcher, Elena Álvarez-Buylla of the National Autonomous University of Mexico (UNAM) in Mexico City:

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First one paper indicates that genetic material from GM crops has been exchanged with traditional corm crops. People with vested interested on both sides of the GM matter come out to either praise or eviscerate the work.

Another paper this possibility found no evidence for such a transfer. But a paper about to be published looks at a lot more fields and finds evidence just the sorts of DNA traces if there was mingling of the GM genetic material in traditional fields.

The real controversy for me, though, is the publication history of the new paper. It was described in Nature, thusly:

Jose Sarukhán, a biologist at the UNAM and a member of the US National Academy of Sciences, recommended the Álvarez-Buylla article for publication in Proceedings of the National Academy of Sciences. It was rejected; in a letter to the authors on 14 March this year, the journal’s editor-in-chief Randy Schekman, a professor at the University of California, Berkeley, wrote that the biology and genetics didn’t warrant publication, and that a reviewer had pointed out the report could “gain undue exposure in the press due to a political or other environmental agenda”. Sarukhán responds: “I saw no reason why it should not be published.”

Now, PNAS is a pretty nice journal but one of its caveats is that researchers who are members of the National Academy of Sciences get some special perks. First, they can publish almost anything they want without needing peer review at all. While this encourages some very novel works, it does mean that some weird stuff gets out.

But members can also recommend a paper to be published. Usually this goes through some review, but not as strenuous as full peer review. The feeling is that if a member wants to ’sponsor’ the paper, they have already done some peer review to protect their reputation.

This is the first time I have beard about a member of the Academy recommending a paper to PNAS that was subsequently rejected. In fact, I have never heard of a reviewer comment that referenced the controversy that paper might produce.

Why bring up possible controversies if the science was not up to snuff? And what snub a member of the Academy? Was the paper rejected from PNAS more because of the fear of controversy by the popular press or because there were problems with the science?

This seems familiar. Large organizations that have vested interests in the science looking a certain way and highlight research that fits their pre-determined models. Work that does not fit is tarnished as rapidly as possible. We seem to see this a lot these days.

I would just hate to see a premier publication such as PNAS make decisions that reflect possible controversy than the science. I guess we will have to wait for the paper to see how good the science really is.

The final paragraph is depressing to contemplate. That instead of following the scence to the truth, researchers have self-imposed linits to the areas of research due to the controversial nature of the work:

However, the new paper doesn’t confirm an important conclusion from the original Nature paper — whether the transgenes had been integrated into landrace genomes and passed along to progeny plants. Álvarez-Buylla suspects this may be the case, but she’s not interested in pursuing another round of politically charged battles — and will leave that work to others.

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Finding success

Wikis and web browsers:
[Via Discovering Biology in a Digital World]

In our last episode, I wrote about embedding Google forms in my classroom wiki pages.

Recently, we’ve been working on a project where students enter results into a Google Docs spreadsheet, via our classroom wiki. All the students were able to enter their results.

Except for one.

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In typical Web 2.0 fashion, a workaround to success was found rather than figuring out in detail what was causing the problem. IE just does not play nicely with so much of the web these days, particularly Web 2.0 tools.

I generally use Safari. It just works the way I want it too. But even it gets wacky at some sites, so I fire up Firefox. It works fine but I have just never gotten excited about it to make it my main browser.

I’m not interested in really figuring out why. i just know what to do for my best workflow and what to do if something fails. That is the best to really hope for in most situations online these days.

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